STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20372.1Bacterial type II/III secretion system short domain protein. (287 aa)    
Predicted Functional Partners:
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
 
  
 0.706
KRG17564.1
3-deoxy-D-manno-octulosonic-acid kinase.
  
     0.685
KRG21010.1
Hypothetical protein.
 
  
 0.652
KRG21424.1
Hypothetical protein.
  
     0.634
fliN
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.532
KRG20656.1
Hypothetical protein.
 
  
  0.498
fliI
Flagellum-specific ATP synthase.
  
  
 0.487
KRG18465.1
Putative diguanylate cyclase.
  
  
 0.485
ptrA
Protease 3 precursor.
  
     0.476
KRG21962.1
Hypothetical protein.
  
     0.471
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.