Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
KRG20373.1Ankyrin repeats (3 copies). (711 aa)    
Predicted Functional Partners:
ankX_9
Phosphocholine transferase AnkX.
  
 
   0.788
KRG18906.1
Ankyrin repeats (3 copies).
  
 
   0.788
KRG21122.1
Ankyrin repeats (3 copies).
  
 
   0.787
KRG19439.1
Ankyrin repeats (3 copies).
  
 
   0.787
KRG21793.1
Ankyrin repeats (3 copies).
  
     0.775
ankX_6
Phosphocholine transferase AnkX.
  
     0.775
KRG21123.1
Ankyrin repeats (3 copies).
  
     0.775
ankX_7
Phosphocholine transferase AnkX.
  
     0.775
KRG20900.1
Ankyrin repeat protein.
  
     0.775
ankX_11
Phosphocholine transferase AnkX.
  
     0.775
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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