STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadC_2Glutamate/gamma-aminobutyrate antiporter. (459 aa)    
Predicted Functional Partners:
KRG18634.1
Hypothetical protein.
    
 0.931
KRG20384.1
Putative NUDIX hydrolase.
       0.773
KRG18465.1
Putative diguanylate cyclase.
  
 
 0.740
nadE
Glutamine-dependent NAD(+) synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.725
prpB
Methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate.
   
   0.585
prpD
2-methylcitrate dehydratase.
       0.551
prpC
2-methylcitrate synthase; Belongs to the citrate synthase family.
       0.551
trpC
Tryptophan biosynthesis protein TrpCF; Belongs to the TrpF family.
    
 
 0.536
tyrP_2
Tyrosine-specific transport protein.
  
 
 0.531
tyrP_1
Tyrosine-specific transport protein.
  
 
 0.516
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.