STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20435.1Hypothetical protein. (786 aa)    
Predicted Functional Partners:
rpoE
ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
   0.830
KRG21016.1
Fimbrial assembly protein (PilN).
  
    0.809
KRG21015.1
Pilus assembly protein, PilO.
  
  
 0.799
KRG21014.1
Pilus assembly protein, PilP.
  
    0.774
KRG22871.1
PilZ domain protein.
  
     0.772
KRG22017.1
LysM domain/BON superfamily protein.
  
   
 0.764
KRG21017.1
Competence protein A.
  
  
 0.757
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
  
  
 0.754
KRG21250.1
Hypothetical protein.
  
     0.726
KRG22303.1
Neisseria PilC protein.
  
     0.711
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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