Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KRG20316.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
desVI
dTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose.
 
     0.942
mfpsA
Mannosylfructose-phosphate synthase.
 
 
  0.923
epsN_2
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.922
KRG20318.1
Hypothetical protein.
 
     0.882
gmd_2
GDP-mannose 4,6-dehydratase.
 
 
 0.819
KRG20315.1
Glycosyl transferases group 1.
  
 
  0.810
KRG20308.1
Capsule polysaccharide biosynthesis protein.
    
  0.704
tagD
Glycerol-3-phosphate cytidylyltransferase.
       0.639
puuD_2
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD.
       0.639
gtaB_2
UTP--glucose-1-phosphate uridylyltransferase.
       0.639
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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