STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
desVIdTDP-3-amino-3,4, 6-trideoxy-alpha-D-glucopyranose. (254 aa)    
Predicted Functional Partners:
KRG20316.1
Hypothetical protein.
 
     0.942
epsN_2
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
  
  0.894
mfpsA
Mannosylfructose-phosphate synthase.
 
     0.855
KRG20318.1
Hypothetical protein.
 
     0.821
KRG20315.1
Glycosyl transferases group 1.
 
     0.815
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
 0.752
KRG17436.1
Glycine/sarcosine N-methyltransferase.
  
 
  0.745
tagD
Glycerol-3-phosphate cytidylyltransferase.
  
    0.646
puuD_2
Gamma-glutamyl-gamma-aminobutyrate hydrolase PuuD.
  
    0.645
KRG20313.1
CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase.
  
    0.644
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.