Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ankX_12Phosphocholine transferase AnkX. (311 aa)    
Predicted Functional Partners:
KRG19439.1
Ankyrin repeats (3 copies).
  
 
   0.788
KRG18906.1
Ankyrin repeats (3 copies).
  
 
   0.788
ankX_4
Phosphocholine transferase AnkX.
  
 
   0.787
KRG20615.1
Ankyrin repeats (3 copies).
  
 
   0.784
KRG22705.1
Ankyrin repeats (3 copies).
  
     0.775
KRG22799.1
Ankyrin repeats (3 copies).
  
     0.775
KRG21699.1
Ankyrin repeats (3 copies).
  
     0.775
KRG21793.1
Ankyrin repeats (3 copies).
  
     0.775
KRG21928.1
Ankyrin repeats (3 copies).
  
     0.775
KRG20953.1
Ankyrin repeats (3 copies).
  
     0.775
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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