STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20269.1Type-F conjugative transfer system protein (TrbI). (116 aa)    
Predicted Functional Partners:
KRG20267.1
Type IV conjugative transfer system lipoprotein (TraV).
       0.773
KRG20268.1
AAA-like domain protein.
       0.773
KRG20270.1
Peptidase S26.
       0.773
KRG20271.1
Hypothetical protein.
       0.773
KRG20272.1
TraU protein.
       0.773
KRG20273.1
Type-F conjugative transfer system pilin assembly protein.
       0.773
KRG20264.1
TraE protein.
       0.762
KRG20265.1
TraK protein.
       0.762
KRG20266.1
Bacterial conjugation TrbI-like protein.
       0.762
KRG20274.1
Conjugal transfer mating pair stabilization protein TraN.
       0.737
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.