STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilE_2Fimbrial protein precursor; Belongs to the N-Me-Phe pilin family. (140 aa)    
Predicted Functional Partners:
KRG22306.1
Hypothetical protein.
 
  
 0.699
epsF_2
Type II secretion system protein F.
 
   
 0.686
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
 
   
 0.675
outO
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.674
KRG22305.1
Hypothetical protein.
 
  
 0.665
KRG22303.1
Neisseria PilC protein.
 
  
 0.661
pilE_3
Fimbrial protein precursor; Belongs to the N-Me-Phe pilin family.
 
    
0.656
KRG19771.1
Hypothetical protein.
       0.623
KRG22304.1
Hypothetical protein.
 
  
 0.612
csbB
Putative glycosyltransferase CsbB.
  
    0.612
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.