STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG18909.1Hypothetical protein. (223 aa)    
Predicted Functional Partners:
amiC_2
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
     
 0.770
KRG21194.1
Hypothetical protein.
  
     0.765
KRG21197.1
AAA-like domain protein.
  
     0.758
KRG21193.1
Hypothetical protein.
  
     0.755
KRG20886.1
Ankyrin repeats (3 copies).
  
     0.734
dacB
D-alanyl-D-alanine carboxypeptidase DacB precursor.
  
  
  0.697
KRG20717.1
Hypothetical protein.
 
     0.596
ftsI_1
Peptidoglycan synthase FtsI precursor; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.
  
  
  0.542
mrcA
Penicillin-binding protein 1A.
  
  
  0.527
dacC
D-alanyl-D-alanine carboxypeptidase DacC precursor; Belongs to the peptidase S11 family.
    
 0.519
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.