STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG18653.1Caspase domain protein. (291 aa)    
Predicted Functional Partners:
KRG18180.1
Mitochondrial carrier protein.
  
     0.731
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
  0.679
KRG21573.1
Mitochondrial carrier protein.
  
     0.666
yfkE
Putative cation exchanger YfkE; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
  
     0.624
tcrA
Transcriptional regulatory protein TcrA.
  
 
  0.613
putA
Bifunctional protein PutA; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.606
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.
  
     0.573
pleC
Non-motile and phage-resistance protein.
  
 
  0.571
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
  0.461
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
  0.459
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.