STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG17995.1Bacterial regulatory protein, luxR family. (267 aa)    
Predicted Functional Partners:
KRG18465.1
Putative diguanylate cyclase.
     
 0.742
tcrA
Transcriptional regulatory protein TcrA.
     
 0.693
barA_2
Signal transduction histidine-protein kinase BarA.
     
 0.644
KRG22653.1
Serine/threonine protein kinase.
  
     0.567
yhdN_2
General stress protein 69.
       0.563
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
    
   0.536
KRG20942.1
Bacterial regulatory protein, luxR family.
  
 
0.525
KRG21776.1
Serine/threonine protein kinase.
  
     0.495
prkC_2
Serine/threonine-protein kinase PrkC.
   
 0.488
KRG17994.1
Hypothetical protein.
       0.430
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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