STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
emrA_2Multidrug export protein EmrA. (389 aa)    
Predicted Functional Partners:
emrB
Multidrug export protein EmrB; Belongs to the major facilitator superfamily.
 0.997
oprM_2
Outer membrane protein OprM precursor.
 0.908
oprM_1
Outer membrane protein OprM precursor.
 0.890
tolC
Outer membrane protein TolC precursor.
 
 0.878
bepC
Outer membrane efflux protein BepC precursor.
  
 0.777
czcC
Cobalt-zinc-cadmium resistance protein CzcC precursor.
  
 0.777
apxIB_1
Toxin RTX-I translocation ATP-binding protein.
   
  0.643
apxIB_2
Toxin RTX-I translocation ATP-binding protein.
   
  0.643
macB
Macrolide export ATP-binding/permease protein MacB.
  
 
 0.595
mdtA_2
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
 0.567
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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