STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proP_3Proline/betaine transporter. (432 aa)    
Predicted Functional Partners:
KRG17816.1
Methyltransferase domain protein.
 
 
  0.754
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
     
 0.741
KRG17818.1
Hypothetical protein.
       0.737
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
   
    0.721
naiP
Putative niacin/nicotinamide transporter NaiP.
  
     0.682
ribC
Riboflavin synthase.
   
    0.555
emrA_2
Multidrug export protein EmrA.
  
  0.492
KRG17815.1
Polysaccharide deacetylase.
       0.491
cvaA
Colicin V secretion protein CvaA.
  
  0.431
serA
D-3-phosphoglycerate dehydrogenase; Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L- serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
  0.419
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.