Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRG17289.1Bacterial conjugation TrbI-like protein. (411 aa)    
Predicted Functional Partners:
virB4
Type IV secretion system protein virB4.
 
     0.947
KRG20271.1
Hypothetical protein.
 
     0.791
KRG19158.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.791
KRG20268.1
AAA-like domain protein.
 
     0.785
KRG20272.1
TraU protein.
 
     0.785
KRG20275.1
Hypothetical protein.
 
     0.785
KRG20276.1
Conjugative relaxosome accessory transposon protein.
 
     0.785
KRG20278.1
TraG-like protein, N-terminal region.
 
     0.785
KRG19156.1
TraU protein.
 
     0.785
KRG19160.1
Hypothetical protein.
 
     0.785
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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