Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
virB4Type IV secretion system protein virB4. (821 aa)    
Predicted Functional Partners:
KRG21207.1
Bacterial conjugation TrbI-like protein.
  
 0.967
KRG17289.1
Bacterial conjugation TrbI-like protein.
 
     0.947
KRG20271.1
Hypothetical protein.
     0.847
KRG20270.1
Peptidase S26.
 
   
 0.794
KRG19158.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.791
KRG20272.1
TraU protein.
 
   
 0.790
KRG19156.1
TraU protein.
 
   
 0.790
KRG20266.1
Bacterial conjugation TrbI-like protein.
 
     0.785
KRG20276.1
Conjugative relaxosome accessory transposon protein.
 
     0.785
KRG20278.1
TraG-like protein, N-terminal region.
 
     0.785
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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