STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APQ15385.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
APQ15282.1
Flagellar motor protein MotB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.814
APQ14964.1
N-acetylmuramoyl-L-alanine amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.811
APQ14785.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.793
APQ15431.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.793
alr
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
   
  
 0.784
APQ14879.1
Penicillin-binding protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.782
infA
Translation initiation factor IF-1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
    
 
 0.736
APQ15258.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein.
   
 
 0.732
APQ15565.1
Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.613
APQ15279.1
Flagellar hook protein FlgE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.603
Your Current Organism:
Borreliella garinii
NCBI taxonomy Id: 29519
Other names: ATCC 51383, B. garinii, Borrelia garini, Borrelia garinii, Borrelia genomic group 20047, CIP 103362, DSM 10534, strain 20047
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.