STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ60547.1Biopolymer transport protein ExbB. (279 aa)    
Predicted Functional Partners:
SJZ60500.1
Biopolymer transport protein ExbD.
 
 
 0.989
SJZ60460.1
Biopolymer transport protein ExbD.
 
 
 0.988
SJZ64116.1
Outer membrane transport energization protein TonB (TC 2.C.1.1.1).
 
 
 0.917
SJZ67426.1
Biopolymer transport protein ExbD.
 
 
 0.916
SJZ60525.1
Hypothetical protein.
  
    0.821
SJZ67447.1
TonB family C-terminal domain-containing protein.
 
 
 0.804
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
  
 
 0.770
SJZ53115.1
Protein of unknown function.
  
     0.764
SJZ89881.1
Hypothetical protein.
  
    0.703
SJZ94690.1
Outer membrane receptor for ferrienterochelin and colicins.
  
    0.551
Your Current Organism:
Porphyromonas circumdentaria
NCBI taxonomy Id: 29524
Other names: ATCC 51356, CCUG 41934, JCM 13864, NCTC 12469, P. circumdentaria, VPB 3329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.