STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ63145.1Hypothetical protein. (457 aa)    
Predicted Functional Partners:
rimO
SSU ribosomal protein S12P methylthiotransferase; Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12; Belongs to the methylthiotransferase family. RimO subfamily.
   
   0.823
ftsY
Signal recognition particle-docking protein FtsY; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC).
     
 0.808
SJZ73908.1
Outer membrane protein OmpA.
  
   0.776
SJZ68920.1
Protein of unknown function.
  
     0.771
SJZ47873.1
Hypothetical protein.
  
    0.769
SJZ49375.1
Putative porin.
  
     0.769
SJZ78019.1
Hypothetical protein.
  
     0.767
SJZ72546.1
Hypothetical protein.
  
     0.766
SJZ61112.1
Nucleotide-binding universal stress protein, UspA family.
  
     0.764
SJZ51668.1
Sporulation related domain-containing protein.
  
     0.758
Your Current Organism:
Porphyromonas circumdentaria
NCBI taxonomy Id: 29524
Other names: ATCC 51356, CCUG 41934, JCM 13864, NCTC 12469, P. circumdentaria, VPB 3329
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.