STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SJZ84256.1Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (550 aa)    
Predicted Functional Partners:
SJZ67846.1
Malate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 
 0.995
SJZ47127.1
Succinate dehydrogenase subunit A.
  
 
 0.990
SJZ88015.1
Hypothetical protein.
  
 
 0.990
SJZ47095.1
Succinate dehydrogenase subunit B.
  
 
 0.988
SJZ69236.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
 
 
 0.980
SJZ97562.1
Phosphotransacetylase.
  
 
 0.949
SJZ69485.1
Succinate-semialdehyde dehydrogenase.
   
 
 0.939
SJZ71487.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 
 0.939
SJZ67639.1
Glycine dehydrogenase (decarboxylating) alpha subunit; Belongs to the GcvP family.
   
    0.923
SJZ47152.1
Succinate dehydrogenase subunit C.
    
 0.915
Your Current Organism:
Porphyromonas circumdentaria
NCBI taxonomy Id: 29524
Other names: ATCC 51356, CCUG 41934, JCM 13864, NCTC 12469, P. circumdentaria, VPB 3329
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