STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW04011.1RNA polymerase sigma factor, sigma-70 family. (234 aa)    
Predicted Functional Partners:
SEW14559.1
PAS domain S-box-containing protein.
 
 
 0.986
SEW53703.1
PAS domain S-box-containing protein.
 
 
 0.983
SEV98434.1
Signal transduction histidine kinase.
  
 0.965
SEW53043.1
Signal transduction histidine kinase.
  
 0.953
SEW25714.1
Tetratricopeptide repeat-containing protein.
 
 0.929
SEW50775.1
Signal transduction histidine kinase.
 
 
 0.870
SEW52957.1
Signal transduction histidine kinase.
 
 0.867
SEW51820.1
Signal transduction histidine kinase.
 
  0.856
SEW13221.1
Signal transduction histidine kinase.
   
 0.837
SEW38666.1
PAS domain S-box-containing protein.
   
 0.837
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.