STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW04219.1Periplasmic chaperone for outer membrane proteins Skp. (169 aa)    
Predicted Functional Partners:
SEW04270.1
Beta-barrel assembly machine subunit BamA.
 
  
 0.769
SEW38384.1
Lipopolysaccharide-assembly.
  
     0.710
SEW50802.1
Tetratricopeptide repeat-containing protein.
  
  
 0.706
SEW04244.1
Periplasmic chaperone for outer membrane proteins Skp.
 
    
0.697
SEW55492.1
Outer membrane protein assembly factor BamA.
 
  
 0.697
SEW35648.1
Signal peptidase I; Belongs to the peptidase S26 family.
 
     0.645
SEW31057.1
Protein of unknown function.
  
     0.638
SEW52418.1
Membrane protein YfhO.
  
     0.638
SEW12575.1
TPR repeat-containing protein.
  
  
 0.637
SEW51649.1
Membrane protein YfhO.
  
     0.631
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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