STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW08596.1Outer membrane insertion C-terminal signal. (206 aa)    
Predicted Functional Partners:
SEW11238.1
Outer membrane protein assembly factor BamA.
  
 
   0.601
SEW08574.1
Outer membrane protein beta-barrel domain-containing protein.
 
    
0.598
SEW08622.1
Outer membrane protein beta-barrel domain-containing protein.
 
    
0.588
SEW40953.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.586
SEW54427.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
 
 0.575
SEW55226.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
 
 0.563
SEW11258.1
Family of unknown function.
  
     0.548
SEW04219.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
 
 0.542
SEW35667.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.539
SEW54721.1
Serine protease, S1-C subfamily, contains C-terminal PDZ domain.
  
 
   0.519
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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