STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEW29821.1TonB-linked outer membrane protein, SusC/RagA family. (1149 aa)    
Predicted Functional Partners:
SEW29811.1
SusD family protein.
 
     0.942
SEW52282.1
SusD family protein.
  
     0.770
SEW19425.1
Starch-binding associating with outer membrane.
  
     0.769
SEW56363.1
SusD family protein.
  
     0.769
SEW41104.1
SusD family protein.
  
     0.765
SEW19566.1
SusD family protein.
 
     0.763
SEW51497.1
Starch-binding associating with outer membrane.
  
     0.759
SEW30314.1
SusD family protein.
  
     0.758
SEW29802.1
Thiol-disulfide isomerase or thioredoxin.
       0.757
SEW50864.1
Starch-binding associating with outer membrane.
  
     0.756
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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