Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEW35544.1 | SEW35548.1 | SAMN04488122_2268 | SAMN04488122_2269 | Carboxymethylenebutenolidase. | Glycine/D-amino acid oxidase. | 0.560 |
SEW35544.1 | SEW44703.1 | SAMN04488122_2268 | SAMN04488122_3367 | Carboxymethylenebutenolidase. | Rhamnogalacturonyl hydrolase YesR. | 0.432 |
SEW35544.1 | gcvP | SAMN04488122_2268 | SAMN04488122_6125 | Carboxymethylenebutenolidase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.402 |
SEW35548.1 | SEW35544.1 | SAMN04488122_2269 | SAMN04488122_2268 | Glycine/D-amino acid oxidase. | Carboxymethylenebutenolidase. | 0.560 |
SEW35548.1 | gcvP | SAMN04488122_2269 | SAMN04488122_6125 | Glycine/D-amino acid oxidase. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.788 |
SEW44703.1 | SEW35544.1 | SAMN04488122_3367 | SAMN04488122_2268 | Rhamnogalacturonyl hydrolase YesR. | Carboxymethylenebutenolidase. | 0.432 |
gcvP | SEW35544.1 | SAMN04488122_6125 | SAMN04488122_2268 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Carboxymethylenebutenolidase. | 0.402 |
gcvP | SEW35548.1 | SAMN04488122_6125 | SAMN04488122_2269 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glycine/D-amino acid oxidase. | 0.788 |