STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW38799.1Phenazine biosynthesis protein PhzF family. (265 aa)    
Predicted Functional Partners:
SEW38790.1
CubicO group peptidase, beta-lactamase class C family.
 
     0.812
SEW38809.1
Predicted arabinose efflux permease, MFS family.
       0.773
SEW38815.1
Transcriptional regulator, TetR family.
       0.572
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
    
 0.439
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.