STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW39415.1Starch-binding associating with outer membrane. (527 aa)    
Predicted Functional Partners:
SEW39424.1
TonB-linked outer membrane protein, SusC/RagA family.
 
 
   0.948
SEW51537.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.813
SEW44413.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.779
SEW39397.1
alpha-L-fucosidase.
       0.773
SEW39404.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
       0.773
SEW51635.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.766
SEW52889.1
TonB-linked outer membrane protein, SusC/RagA family.
  
     0.722
SEW51551.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.720
SEW51856.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.712
SEW28799.1
TonB-linked outer membrane protein, SusC/RagA family.
  
 
   0.706
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.