STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW40778.1NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family. (264 aa)    
Predicted Functional Partners:
SEW20947.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 0.764
SEW11347.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.763
SEW28471.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.759
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
  
 0.676
SEW29922.1
[Acyl-carrier-protein] S-malonyltransferase.
 
 0.652
SEW40770.1
DNA-binding transcriptional regulator, HxlR family.
 
     0.640
SEW54837.1
3-oxoacyl-[acyl-carrier-protein] synthase-1; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
  
  0.603
SEW51589.1
Calcineurin-like phosphoesterase.
    
   0.583
SEW42380.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase.
  
  0.573
SEW54813.1
3-hydroxyacyl-[acyl-carrier-protein] dehydratase.
  
  0.573
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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