STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW49629.1NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa)    
Predicted Functional Partners:
fabZ
3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the thioester dehydratase family. FabZ subfamily.
    
  0.656
SEW49626.1
NADP-dependent 3-hydroxy acid dehydrogenase YdfG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 
0.619
SEW42083.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
  0.605
SEW54838.1
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 
0.573
SEW49621.1
SnoaL-like domain-containing protein.
       0.500
SEW49622.1
AraC-type DNA-binding protein.
       0.500
SEW49624.1
Hypothetical protein.
       0.500
SEW49631.1
DNA-binding transcriptional regulator, AcrR family.
       0.484
SEW01346.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
  0.430
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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