SEW50823.1 protein (Chitinophaga arvensicola)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SEW50823.1

DoxX protein. (360 aa)

Predicted Functional Partners:

tpiA

0.906

SEW50820.1

0.814

SEW05192.1

0.764

SEW18955.1

0.756

SEW55626.1

0.739

SEW22960.1

0.709

rpsU

0.699

SEW53706.1

0.690

SEW37956.1

0.677

SEW19024.1

0.666

Your Current Organism:

Chitinophaga arvensicola

NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SEW05192.1	SEW18955.1	SAMN04488122_0375	SAMN04488122_1052	Protein of unknown function.	uroporphyrinogen-III synthase.	0.765
SEW05192.1	SEW19024.1	SAMN04488122_0375	SAMN04488122_1056	Protein of unknown function.	Gliding motility-associated protein GldM.	0.584
SEW05192.1	SEW22960.1	SAMN04488122_0375	SAMN04488122_1284	Protein of unknown function.	Rod shape-determining protein MreD.	0.727
SEW05192.1	SEW37956.1	SAMN04488122_0375	SAMN04488122_2566	Protein of unknown function.	pRiA4b ORF-3-like protein.	0.749
SEW05192.1	SEW50823.1	SAMN04488122_0375	SAMN04488122_3973	Protein of unknown function.	DoxX protein.	0.764
SEW05192.1	SEW53706.1	SAMN04488122_0375	SAMN04488122_5638	Protein of unknown function.	Uncharacterized metal-binding protein YceD, DUF177 family.	0.764
SEW05192.1	SEW55626.1	SAMN04488122_0375	SAMN04488122_6432	Protein of unknown function.	Protein of unknown function.	0.709
SEW05192.1	rpsU	SAMN04488122_0375	SAMN04488122_6355	Protein of unknown function.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.762
SEW18955.1	SEW05192.1	SAMN04488122_1052	SAMN04488122_0375	uroporphyrinogen-III synthase.	Protein of unknown function.	0.765
SEW18955.1	SEW19024.1	SAMN04488122_1052	SAMN04488122_1056	uroporphyrinogen-III synthase.	Gliding motility-associated protein GldM.	0.681
SEW18955.1	SEW22960.1	SAMN04488122_1052	SAMN04488122_1284	uroporphyrinogen-III synthase.	Rod shape-determining protein MreD.	0.710
SEW18955.1	SEW50823.1	SAMN04488122_1052	SAMN04488122_3973	uroporphyrinogen-III synthase.	DoxX protein.	0.756
SEW18955.1	SEW53706.1	SAMN04488122_1052	SAMN04488122_5638	uroporphyrinogen-III synthase.	Uncharacterized metal-binding protein YceD, DUF177 family.	0.618
SEW18955.1	SEW55626.1	SAMN04488122_1052	SAMN04488122_6432	uroporphyrinogen-III synthase.	Protein of unknown function.	0.729
SEW18955.1	rpsU	SAMN04488122_1052	SAMN04488122_6355	uroporphyrinogen-III synthase.	SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.	0.734
SEW19024.1	SEW05192.1	SAMN04488122_1056	SAMN04488122_0375	Gliding motility-associated protein GldM.	Protein of unknown function.	0.584
SEW19024.1	SEW18955.1	SAMN04488122_1056	SAMN04488122_1052	Gliding motility-associated protein GldM.	uroporphyrinogen-III synthase.	0.681
SEW19024.1	SEW22960.1	SAMN04488122_1056	SAMN04488122_1284	Gliding motility-associated protein GldM.	Rod shape-determining protein MreD.	0.691
SEW19024.1	SEW37956.1	SAMN04488122_1056	SAMN04488122_2566	Gliding motility-associated protein GldM.	pRiA4b ORF-3-like protein.	0.502
SEW19024.1	SEW50823.1	SAMN04488122_1056	SAMN04488122_3973	Gliding motility-associated protein GldM.	DoxX protein.	0.666