STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEW51656.1OmpA family protein. (430 aa)    
Predicted Functional Partners:
SEW41942.1
Chemotaxis protein MotB.
  
0.658
SEW12285.1
Cytochrome c oxidase cbb3-type subunit I/II; Belongs to the heme-copper respiratory oxidase family.
  
  0.616
SEW35962.1
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
  0.610
SEW51655.1
Hypothetical protein.
       0.570
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.558
SEW30356.1
WD40-like Beta Propeller Repeat.
 
0.556
SEW53134.1
Starch-binding associating with outer membrane.
  
 
   0.515
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
   
   0.510
SEW52721.1
Tfp pilus assembly protein PilF.
   
 
 0.498
SEW42207.1
Starch-binding associating with outer membrane.
  
 
   0.481
Your Current Organism:
Chitinophaga arvensicola
NCBI taxonomy Id: 29529
Other names: ATCC 51264, C. arvensicola, CIP 104804, Cytophaga arvensicola, DSM 3695, IAM 12650, JCM 2836, NBRC 14973, strain M64
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