STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL23599.1Alpha-galactosidase. (734 aa)    
Predicted Functional Partners:
SHL23472.1
Beta-galactosidase.
 
  
 0.851
SHL24016.1
Alpha galactosidase A.
  
  
  0.743
SHL20593.1
Beta-galactosidase.
 
  
  0.721
SHN14351.1
Beta-galactosidase.
 
  
  0.707
SHL24328.1
alpha-D-xyloside xylohydrolase.
 
  
  0.690
SHL99546.1
Aldose 1-epimerase.
  
 
  0.690
SHM00053.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
  0.690
SHM65933.1
Beta-galactosidase.
 
  
  0.678
SHN22238.1
Beta galactosidase small chain.
 
  
  0.588
SHN17729.1
Alpha-glucosidase; Belongs to the glycosyl hydrolase 31 family.
    
  0.573
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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