STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL29479.1Uncharacterized membrane protein SpoIIM, required for sporulation. (326 aa)    
Predicted Functional Partners:
SHL29407.1
Protein of unknown function.
     0.981
SHL29442.1
Hypothetical protein.
 
     0.957
SHL29517.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.941
SHL29305.1
Uncharacterized conserved protein, DUF58 family, contains vWF domain.
 
  
 0.895
SHL29368.1
MoxR-like ATPase.
 
    0.749
SHL91818.1
Spore maturation protein SpmA.
   
  
 0.592
SHL29334.1
Hypothetical protein.
       0.511
SHM16234.1
Hypothetical protein.
  
    0.498
SHM14844.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.445
SHM14799.1
Uncharacterized membrane protein YckC, RDD family.
 
    0.423
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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