STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL34174.1Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily. (278 aa)    
Predicted Functional Partners:
SHM85164.1
Phytoene/squalene synthetase.
  
 0.679
SHM77168.1
Cytochrome P450.
  
 0.613
SHM97573.1
Hypothetical protein.
   
 0.594
SHL34124.1
TIGR03643 family protein.
 
     0.590
SHM36418.1
Protein of unknown function.
   
 
 0.575
SHM20999.1
Cytochrome P450.
   
 0.561
SHL31363.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  0.517
SHL61378.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  0.517
SHL67088.1
2-polyprenyl-6-methoxyphenol hydroxylase.
   
  0.517
kmo
Kynurenine 3-monooxygenase; Catalyzes the hydroxylation of L-kynurenine (L-Kyn) to form 3-hydroxy-L-kynurenine (L-3OHKyn). Required for synthesis of quinolinic acid; Belongs to the aromatic-ring hydroxylase family. KMO subfamily.
   
  0.517
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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