STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL52004.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
SHL52049.1
Hypothetical protein.
       0.746
SHL58774.1
Sulfite reductase (NADPH) flavoprotein alpha-component.
    
  0.742
SHL58676.1
Signal transduction histidine kinase.
    
 0.717
SHM39850.1
Assimilatory nitrate reductase (NADH) beta subunit /assimilatory nitrate reductase (NADH) alpha subunit apoprotein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
  
  0.595
SHM48254.1
Glyoxylase, beta-lactamase superfamily II.
   
 
 0.535
SHL52091.1
Beta-galactosidase; Belongs to the glycosyl hydrolase 2 family.
       0.513
SHL53364.1
Hypothetical protein.
 
  
 0.513
SHM40842.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
  
     0.440
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.424
SHL50251.1
Hypothetical protein.
  
     0.403
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.