STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL55050.1Starvation-inducible DNA-binding protein. (157 aa)    
Predicted Functional Partners:
SHL46381.1
ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
   
 
 0.814
SHL55017.1
Putative oxidoreductase.
       0.737
SHL55084.1
Uncharacterized membrane protein YoaK, UPF0700 family.
       0.734
SHL54983.1
Hypothetical protein.
       0.707
SHL55117.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
     0.706
SHL55154.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
       0.653
SHL55187.1
Hypothetical protein.
       0.584
SHL24798.1
Peroxiredoxin (alkyl hydroperoxide reductase subunit C).
  
  
 0.490
SHM54205.1
Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin).
  
  
 0.490
SHL59611.1
Multimeric flavodoxin WrbA.
   
    0.487
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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