STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL56183.1Probable oxidoreductase, LLM family. (341 aa)    
Predicted Functional Partners:
SHN14614.1
Amino acid adenylation domain-containing protein.
   
 0.889
SHN22377.1
Amino acid adenylation domain-containing protein.
   
 0.859
SHN14658.1
Amino acid adenylation domain-containing protein.
   
 0.804
SHN14586.1
Amino acid adenylation domain-containing protein; Partial gene; manually curated.
   
 0.710
SHM15125.1
Sulfite reductase (ferredoxin).
     
 0.673
SHL27713.1
NAD(P)H-dependent FMN reductase.
  
 0.657
SHL38943.1
NAD(P)H-dependent FMN reductase.
  
 0.657
SHN13338.1
Chromate reductase.
  
 0.657
SHM18835.1
NADH-FMN oxidoreductase RutF, flavin reductase (DIM6/NTAB) family.
  
 
 0.650
SHL97113.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
   
 
 0.645
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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