STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHL89228.1Hypothetical protein. (262 aa)    
Predicted Functional Partners:
SHM34873.1
Chitinase family 18.
 
 0.825
SHL89273.1
Hypothetical protein.
 
    
0.797
SHL89086.1
Hypothetical protein.
 
    
0.716
SHL89152.1
Hypothetical protein.
 
    
0.699
SHL89117.1
Hypothetical protein.
 
    
0.691
SHL89191.1
Hypothetical protein.
       0.682
SHM51513.1
Mannan endo-1,4-beta-mannosidase; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
     
 0.561
SHM35073.1
Chitinase, GH18 family.
    
  0.529
SHM44568.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
    
  0.529
SHM77050.1
Glycosyl hydrolases family 18.
    
  0.529
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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