STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM02914.1Glycosyl-hydrolase 97 C-terminal, oligomerisation. (726 aa)    
Predicted Functional Partners:
SHM02959.1
Glycosidase.
 
  
  0.923
SHM11088.1
Alpha-amylase.
    
 0.723
SHM03007.1
Protein of unknown function.
 
  
  0.688
SHM11123.1
Glycosidase; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.660
SHM03049.1
Starch-binding associating with outer membrane.
 
     0.636
SHM11489.1
Por secretion system C-terminal sorting domain-containing protein.
  
  
  0.631
SHN01522.1
Alpha-amylase; Belongs to the glycosyl hydrolase 13 family.
  
  
  0.612
SHM51551.1
Alpha-glucosidase.
  
  
 
0.604
SHM02871.1
Por secretion system C-terminal sorting domain-containing protein.
 
  
  0.596
SHM11240.1
Maltose phosphorylase.
    
  0.563
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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