Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHL23106.1 | SHL42618.1 | SAMN05444387_0088 | SAMN05444387_0579 | 4-hydroxy-tetrahydrodipicolinate synthase. | Aspartate kinase. | 0.856 |
SHL23106.1 | SHM14571.1 | SAMN05444387_0088 | SAMN05444387_2041 | 4-hydroxy-tetrahydrodipicolinate synthase. | Homoserine dehydrogenase. | 0.664 |
SHL23106.1 | SHM14645.1 | SAMN05444387_0088 | SAMN05444387_2043 | 4-hydroxy-tetrahydrodipicolinate synthase. | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 0.907 |
SHL23106.1 | SHM14685.1 | SAMN05444387_0088 | SAMN05444387_2044 | 4-hydroxy-tetrahydrodipicolinate synthase. | Aspartate kinase. | 0.907 |
SHL23106.1 | SHN10670.1 | SAMN05444387_0088 | SAMN05444387_4134 | 4-hydroxy-tetrahydrodipicolinate synthase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.470 |
SHL23106.1 | asd | SAMN05444387_0088 | SAMN05444387_1867 | 4-hydroxy-tetrahydrodipicolinate synthase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.907 |
SHL23106.1 | dapA | SAMN05444387_0088 | SAMN05444387_0710 | 4-hydroxy-tetrahydrodipicolinate synthase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.841 |
SHL23106.1 | dapF | SAMN05444387_0088 | SAMN05444387_2822 | 4-hydroxy-tetrahydrodipicolinate synthase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.613 |
SHL42618.1 | SHL23106.1 | SAMN05444387_0579 | SAMN05444387_0088 | Aspartate kinase. | 4-hydroxy-tetrahydrodipicolinate synthase. | 0.856 |
SHL42618.1 | SHM14571.1 | SAMN05444387_0579 | SAMN05444387_2041 | Aspartate kinase. | Homoserine dehydrogenase. | 0.870 |
SHL42618.1 | SHM14645.1 | SAMN05444387_0579 | SAMN05444387_2043 | Aspartate kinase. | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 0.996 |
SHL42618.1 | SHM14685.1 | SAMN05444387_0579 | SAMN05444387_2044 | Aspartate kinase. | Aspartate kinase. | 0.992 |
SHL42618.1 | SHN10670.1 | SAMN05444387_0579 | SAMN05444387_4134 | Aspartate kinase. | Aspartate kinase; Belongs to the aspartokinase family. | 0.878 |
SHL42618.1 | asd | SAMN05444387_0579 | SAMN05444387_1867 | Aspartate kinase. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.980 |
SHL42618.1 | dapA | SAMN05444387_0579 | SAMN05444387_0710 | Aspartate kinase. | 4-hydroxy-tetrahydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA). | 0.880 |
SHL42618.1 | dapF | SAMN05444387_0579 | SAMN05444387_2822 | Aspartate kinase. | Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan. | 0.651 |
SHL42618.1 | lysA | SAMN05444387_0579 | SAMN05444387_0180 | Aspartate kinase. | Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. | 0.856 |
SHM14571.1 | SHL23106.1 | SAMN05444387_2041 | SAMN05444387_0088 | Homoserine dehydrogenase. | 4-hydroxy-tetrahydrodipicolinate synthase. | 0.664 |
SHM14571.1 | SHL42618.1 | SAMN05444387_2041 | SAMN05444387_0579 | Homoserine dehydrogenase. | Aspartate kinase. | 0.870 |
SHM14571.1 | SHM14645.1 | SAMN05444387_2041 | SAMN05444387_2043 | Homoserine dehydrogenase. | Homoserine O-acetyltransferase; Belongs to the AB hydrolase superfamily. MetX family. | 0.969 |
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