STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM08436.1HlyD family secretion protein. (416 aa)    
Predicted Functional Partners:
SHM08350.1
Putative ABC transport system permease protein.
 
 0.965
SHN19359.1
Cobalt-zinc-cadmium resistance protein CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.950
SHM67186.1
Putative ABC transport system permease protein.
 
 0.948
SHM67219.1
Putative ABC transport system permease protein.
 
 0.948
SHM67252.1
Putative ABC transport system permease protein.
 
 0.948
SHM08395.1
Putative ABC transport system ATP-binding protein.
 
  0.943
SHM67286.1
Putative ABC transport system ATP-binding protein.
 
  0.881
SHM08515.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.844
SHM67348.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.756
SHM93019.1
Putative ABC transport system permease protein.
  
  0.682
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.