STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM08515.1Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. (441 aa)    
Predicted Functional Partners:
SHL58676.1
Signal transduction histidine kinase.
  
 0.991
SHL53364.1
Hypothetical protein.
   
 0.971
SHM43157.1
PAS domain S-box-containing protein.
 
 
 0.951
SHM08476.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
 
  0.889
SHL54460.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.880
SHN14134.1
Monosaccharide ABC transporter substrate-binding protein, CUT2 family.
   
 0.845
SHM08436.1
HlyD family secretion protein.
 
     0.844
SHM08350.1
Putative ABC transport system permease protein.
 
    0.818
SHM67314.1
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains.
 
  0.803
SHM67252.1
Putative ABC transport system permease protein.
 
    0.783
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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