Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHM16034.1 | SHM16118.1 | SAMN05444387_2079 | SAMN05444387_2081 | Protein of unknown function. | Fic family protein. | 0.431 |
SHM16034.1 | dxs | SAMN05444387_2079 | SAMN05444387_2080 | Protein of unknown function. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.672 |
SHM16118.1 | SHM16034.1 | SAMN05444387_2081 | SAMN05444387_2079 | Fic family protein. | Protein of unknown function. | 0.431 |
SHM16118.1 | SHM16198.1 | SAMN05444387_2081 | SAMN05444387_2083 | Fic family protein. | Hypothetical protein. | 0.507 |
SHM16118.1 | SHM32874.1 | SAMN05444387_2081 | SAMN05444387_2215 | Fic family protein. | Fic family protein. | 0.513 |
SHM16118.1 | SHM83689.1 | SAMN05444387_2081 | SAMN05444387_3358 | Fic family protein. | Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family. | 0.430 |
SHM16118.1 | dnaK | SAMN05444387_2081 | SAMN05444387_0638 | Fic family protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.636 |
SHM16118.1 | dxs | SAMN05444387_2081 | SAMN05444387_2080 | Fic family protein. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.505 |
SHM16118.1 | polA | SAMN05444387_2081 | SAMN05444387_2170 | Fic family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.429 |
SHM16118.1 | tadA | SAMN05444387_2081 | SAMN05444387_2082 | Fic family protein. | tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.554 |
SHM16198.1 | SHM16118.1 | SAMN05444387_2083 | SAMN05444387_2081 | Hypothetical protein. | Fic family protein. | 0.507 |
SHM16198.1 | tadA | SAMN05444387_2083 | SAMN05444387_2082 | Hypothetical protein. | tRNA(adenine34) deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. | 0.701 |
SHM32874.1 | SHM16118.1 | SAMN05444387_2215 | SAMN05444387_2081 | Fic family protein. | Fic family protein. | 0.513 |
SHM32874.1 | dnaK | SAMN05444387_2215 | SAMN05444387_0638 | Fic family protein. | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | 0.636 |
SHM32874.1 | polA | SAMN05444387_2215 | SAMN05444387_2170 | Fic family protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.429 |
SHM83689.1 | SHM16118.1 | SAMN05444387_3358 | SAMN05444387_2081 | Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family. | Fic family protein. | 0.430 |
dnaK | SHM16118.1 | SAMN05444387_0638 | SAMN05444387_2081 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Fic family protein. | 0.636 |
dnaK | SHM32874.1 | SAMN05444387_0638 | SAMN05444387_2215 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | Fic family protein. | 0.636 |
dnaK | polA | SAMN05444387_0638 | SAMN05444387_2170 | Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.529 |
dxs | SHM16034.1 | SAMN05444387_2080 | SAMN05444387_2079 | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | Protein of unknown function. | 0.672 |
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