STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM35427.1Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (267 aa)    
Predicted Functional Partners:
SHN14614.1
Amino acid adenylation domain-containing protein.
  
 
 0.890
SHN22377.1
Amino acid adenylation domain-containing protein.
  
 
 0.838
SHN14658.1
Amino acid adenylation domain-containing protein.
  
 
 0.820
SHL26769.1
Glutamate synthase (NADH) large subunit.
    
  0.772
SHN14682.1
Acyl transferase domain-containing protein.
  
 0.754
SHN22372.1
Acyl transferase domain-containing protein.
  
 0.754
SHL72976.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
 
 
0.616
SHN14586.1
Amino acid adenylation domain-containing protein; Partial gene; manually curated.
  
 
 0.612
fabG-2
3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 
0.597
SHM54786.1
3-oxoacyl-[acyl-carrier protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 
0.592
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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