STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM37708.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
SHM37752.1
Glyoxylase, beta-lactamase superfamily II.
 
     0.935
SHM37814.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
 
     0.701
SHL52184.1
Glyoxylase, beta-lactamase superfamily II.
  
     0.484
SHL25237.1
TANFOR domain-containing protein.
  
     0.467
SHL26769.1
Glutamate synthase (NADH) large subunit.
    
  0.451
SHM98489.1
Fibronectin type III domain-containing protein.
  
     0.437
SHM37862.1
Transcriptional regulator, HxlR family.
       0.428
SHL56441.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
  
     0.422
SHM54743.1
Uncharacterized protein YxjI.
  
     0.421
SHN17698.1
Glucose-1-phosphate adenylyltransferase.
    
   0.410
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.