STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM38985.1tRNA (cmo5U34)-methyltransferase. (235 aa)    
Predicted Functional Partners:
SHN14614.1
Amino acid adenylation domain-containing protein.
    
 0.839
SHN14682.1
Acyl transferase domain-containing protein.
   
 0.760
SHN22372.1
Acyl transferase domain-containing protein.
   
 0.760
SHN22377.1
Amino acid adenylation domain-containing protein.
    
 0.736
SHM36828.1
Geranylgeranyl pyrophosphate synthase.
  
 
 0.684
gcvP
Glycine dehydrogenase; Belongs to the GcvP family.
     
 0.679
SHN14658.1
Amino acid adenylation domain-containing protein.
    
 0.664
SHM07988.1
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
    
 0.642
SHM20999.1
Cytochrome P450.
    
 0.601
SHM77168.1
Cytochrome P450.
    
 0.601
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.