STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM42015.1NAD(P)H dehydrogenase (quinone). (199 aa)    
Predicted Functional Partners:
SHM42067.1
Protein of unknown function.
       0.774
SHM41972.1
Protein N-acetyltransferase, RimJ/RimL family.
  
    0.764
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.570
SHM41883.1
Transcriptional regulator, ArsR family.
       0.516
SHM41930.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.516
SHL60713.1
Putative NADPH-quinone reductase (modulator of drug activity B).
  
  
 
0.496
SHM33878.1
Putative NADPH-quinone reductase (modulator of drug activity B).
  
  
 
0.493
SHM42112.1
Hypothetical protein.
       0.460
SHM42157.1
Cytochrome C and Quinol oxidase polypeptide I.
       0.441
SHM42203.1
Hypothetical protein.
       0.436
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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