STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM45307.1Hypothetical protein. (151 aa)    
Predicted Functional Partners:
SHM45270.1
Hypothetical protein.
  
    0.824
SHM45234.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
     0.772
SHM43157.1
PAS domain S-box-containing protein.
    
 0.489
SHM45194.1
Hypothetical protein.
       0.487
SHM45159.1
Hypothetical protein.
 
     0.474
SHM52486.1
Hpt domain-containing protein.
  
  
  0.466
SHN05996.1
Hypothetical protein.
  
     0.460
SHL36191.1
CarboxypepD_reg-like domain-containing protein.
  
     0.447
SHL58676.1
Signal transduction histidine kinase.
    
 0.446
SHM92774.1
Cytochrome C oxidase subunit IV.
  
     0.443
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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