STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM68336.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (248 aa)    
Predicted Functional Partners:
SHM68293.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.999
SHM36057.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.995
SHN15310.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.994
SHN15298.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.988
SHN15321.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
  
  
 
0.954
lptB
Lipopolysaccharide export system ATP-binding protein.
 
  
  0.649
SHM12316.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.589
SHM93789.1
Beta-barrel assembly machine subunit BamA.
 
     0.556
SHM68367.1
Glycosyl transferase family 2.
       0.551
SHM83667.1
ATP-binding cassette, subfamily B, MsbA.
 
   0.533
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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