STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHM74792.1Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. (464 aa)    
Predicted Functional Partners:
SHM72677.1
Protein involved in gliding motility EpsB.
 
 
 0.999
SHM52815.1
Capsular exopolysaccharide family.
 
 
 0.998
SHL96617.1
O-Antigen ligase.
  
 
 0.978
SHM72638.1
Protein involved in gliding motility EpsA.
 
 
 0.967
SHM74759.1
O-Antigen ligase.
 
  
 0.957
SHM72877.1
Mannose-1-phosphate guanylyltransferase.
 
 
 0.951
SHM73820.1
dTDP-4-amino-4,6-dideoxygalactose transaminase.
 
 0.949
SHM52853.1
Polysaccharide export outer membrane protein.
 
 
 0.948
SHL29664.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
 
 
 0.944
SHM72950.1
Protein involved in polysaccharide export, contains SLBB domain of the beta-grasp fold.
  
 
 0.941
Your Current Organism:
Flavobacterium pectinovorum
NCBI taxonomy Id: 29533
Other names: ATCC 19366, CIP 104742, Cytophaga pectinovora, DSM 6368, Empedobacter pectinovorum, F. pectinovorum, Flavibacterium pectinovorum, IFO 15945, JCM 8518, LMG 4031, LMG:4031, NBRC 15945, NCIMB 9059, strain number 81 Dorey
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